Journal: Translational Cancer Research

Article Title: The LINC00957/miR-17-5p axis regulates the cell cycle and migration in glioblastoma via the cuproptosis-related gene nephronectin

doi: 10.21037/tcr-24-450

Figure Lengend Snippet: Knocking down NPNT enhances the sensitivity of glioma cells to cuproptosis inducers. (A) The CCK8 assay of U87 and LN229 cells treating with elesclomol. (B) The ROS levels of shNC or shNPNT U87 and LN229 cells treating with elesclomol and CuCl2. (C) The Copper concentration of shNC or shNPNT U87 and LN229 cells treating with different concentration of elesclomol (10 and 20 nM). Data were expressed as the mean ± standard deviation of three independent experiments (n=3). ns, not significant; ****, P<0.0001. IC 50 , half-maximal inhibitory concentration; ROS, reactive oxygen species; NPNT, nephronectin; CCK8, Cell Counting Kit-8; shNC, shRNA negative control; shNPNT, shRNA NPNT; shRNA, short hairpin RNA.

Article Snippet: U87 and LN229 cells were cultured in 6 cm plates for 24 h and treated with a cuproptosis inducers (elesclomol) for 24 h. Following this, the cells were collected and disrupted ultrasonically to detect intracellular copper according to the manufacturer’s instructions (E-BC-K775-M, Elabscience, Houston, TX, USA).

Techniques: CCK-8 Assay, Concentration Assay, Standard Deviation, Cell Counting, shRNA, Negative Control

Journal: Translational Cancer Research

Article Title: The LINC00957/miR-17-5p axis regulates the cell cycle and migration in glioblastoma via the cuproptosis-related gene nephronectin

doi: 10.21037/tcr-24-450

Figure Lengend Snippet: LncRNA LINC00957 and miR-17-5p can regulate NPNT protein in GBM tumors. (A) ROC curve of the AL365361.1, AL591848.3, LINC00957, and AF111167.2. (B) NPNT mRNA levels and AL365361.1, AL591848.3, LINC00957, and AF111167.2 in LN229 cells with ASO knockdown four potential lncRNAs was detected. Data were expressed as the mean ± standard deviation of three independent experiments (n=3). ns, not significant; ***, P<0.001; ****, P<0.0001. AUC, area under the curve; ASO, antisense oligonucleotide; NC, negative control; lncRNA, long non-coding RNA; NPNT, nephronectin; GBM, glioblastoma; ROC, receiver operating characteristic; mRNA, messenger RNA.

Article Snippet: U87 and LN229 cells were cultured in 6 cm plates for 24 h and treated with a cuproptosis inducers (elesclomol) for 24 h. Following this, the cells were collected and disrupted ultrasonically to detect intracellular copper according to the manufacturer’s instructions (E-BC-K775-M, Elabscience, Houston, TX, USA).

Techniques: Knockdown, Standard Deviation, Negative Control

Journal: Translational Cancer Research

Article Title: The LINC00957/miR-17-5p axis regulates the cell cycle and migration in glioblastoma via the cuproptosis-related gene nephronectin

doi: 10.21037/tcr-24-450

Figure Lengend Snippet: The LINC00957, miR-17-5p, and NPNT regulate the malignant progression of GBM. (A) The GO functional analysis of the related biological processes of DEGs in low expression group and high expression group among LINC00957 and NPNT. (B) The CCK8 results in U87 cells with knockdown of LINC00957 and NPNT. (C) The transwell results of crystal violet staining at 40× magnification in LN229 cells with knockdown of LINC00957. (D) The cell cycle results in LN229 cells with knockdown of NPNT. Data were expressed as the mean ± standard deviation of three independent experiments (n=3). ns, not significant; ****, P<0.0001. ASO, antisense oligonucleotide; NC, negative control; CCK8, Cell Counting Kit-8; OD450, optical density at 450 nm; shNC, shRNA negative control; shNPNT, shRNA NPNT; shRNA, short hairpin RNA; NPNT, nephronectin; GBM, glioblastoma; GO, gene ontology; DEG, differentially expressed gene.

Article Snippet: U87 and LN229 cells were cultured in 6 cm plates for 24 h and treated with a cuproptosis inducers (elesclomol) for 24 h. Following this, the cells were collected and disrupted ultrasonically to detect intracellular copper according to the manufacturer’s instructions (E-BC-K775-M, Elabscience, Houston, TX, USA).

Techniques: Functional Assay, Expressing, Knockdown, Staining, Standard Deviation, Negative Control, Cell Counting, shRNA

Journal: Translational Cancer Research

Article Title: The LINC00957/miR-17-5p axis regulates the cell cycle and migration in glioblastoma via the cuproptosis-related gene nephronectin

doi: 10.21037/tcr-24-450

Figure Lengend Snippet: The lncRNA LINC00957 and miR-17-5p can regulate NPNT protein in GBM tumors. (A) Correlation analysis between NPNT, LINC00957, and miR-17-5p. (B) The RNA levels of NPNT, LINC00957, and miR-17-5p in U87 and LN229 with ASO knockdown LINC00957 was detected; the RNA levels of NPNT, LINC00957 and miR-17-5p in U87 and LN229 treated with miR-17-5p mimic was detected; the RNA levels of NPNT, LINC00957, and miR-17-5p in U87 and LN229 treated with miR-17-5p inhibitor was detected. (C) Predicted binding site between LINC00957 and miR-17-5p. (D) Luciferase reporter gene test was used to test the relationship between LINC00957 and miR-17-5p treated with miR-17-5p mimic in U87 cell. (E) The CCK8 results in ASO NC or ASO LINC00957 U87 cells treated with shNC or shNPNT. Data were expressed as the mean ± standard deviation of three independent experiments (n=3). ns, not significant; ****, P<0.0001. NPNT, nephronectin; ASO, antisense oligonucleotide; NC, negative control; WT, wild-type; MUT, mutated; shNC, shRNA negative control; shNPNT, shRNA NPNT; shRNA, short hairpin RNA; lncRNA, long non-coding RNA; GBM, glioblastoma; CCK8, Cell Counting Kit-8.

Article Snippet: U87 and LN229 cells were cultured in 6 cm plates for 24 h and treated with a cuproptosis inducers (elesclomol) for 24 h. Following this, the cells were collected and disrupted ultrasonically to detect intracellular copper according to the manufacturer’s instructions (E-BC-K775-M, Elabscience, Houston, TX, USA).

Techniques: Knockdown, Binding Assay, Luciferase, Standard Deviation, Negative Control, shRNA, Cell Counting

Journal: PLOS ONE

Article Title: Tetra- O -methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets

doi: 10.1371/journal.pone.0285536

Figure Lengend Snippet: (A) Effects of combination treatment of M 4 N with TMZ on tumor growth in nu/nu mice implanted with glioblastoma LN229 cells. LN229 xenograft mice (N = 5/group) were treated with or without M 4 N by daily oral administration for 35 days. Meanwhile, another set of LN229 xenograft mice (N = 5/group) were treated with TMZ only or M 4 N+TMZ by daily oral administration for 25 days, and the examination of tumor growth was continued even after the termination of drug treatments. The tumor volumes of M 4 N, TMZ, and M 4 N+TMZ groups were significantly different compared to the control group after day 23 (*p<0.05). The bars indicate standard deviations. (B-C) The effects of combination treatments of M 4 N with sorafenib on the survival rates of nu/nu mice (N = 5) implanted with various tumors were examined (A-B). Drugs were administered daily via intravenous tail vein injection (B-C). (B) AsPC-1 pancreatic tumors. (C) HepG2 hepatic tumors. (D) Effect of combination treatments of M 4 N with etoposide, rapamycin, or UCN-01 on HL-1 mouse heart cells. Cell death was examined by the Trypan blue exclusion assay in HL-1 cells treated with combination treatments for 24 h. The concentrations of M 4 N are shown in the figure. The concentrations of etoposide, rapamycin, and UCN-01 were 10, 20, and 5 μM.

Article Snippet: Green fluorescent protein (GFP)-labeled LN229 cells were purchased from Bioresource Collection and Research Center (Hsinchu City, Taiwan).

Techniques: Injection, Trypan Blue Exclusion Assay

Journal: PLOS ONE

Article Title: Tetra- O -methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets

doi: 10.1371/journal.pone.0285536

Figure Lengend Snippet: (A) The box figures show the amounts of metabolites in the treated tumors on an arbitrary scale. The upper edge of each box represents a limit of the upper quartile, whereas the lower edge represents a limit of the lower quartile. The line in the middle of each box represents a median value. Asterisks show that the difference between the LN229 tumors treated with TMZ (T) alone and those with TMZ+M 4 N (TM) were statistically significant by the Student’s t -test (*p<0.05, **p<0.02, ***p<0.01, and ****p<0.1). Sharp marks show that the difference between the LN229 tumors treated with vehicle alone and either those with TMZ (T) alone or those with TM were statistically significant by the Student’s t -test (##p<0.01). The amounts of lactate, α-ketoglutarate, fumarate, and malate were smaller in the TM than T group (indicated by blue downward arrows). Right inlet figure: TM combination treatments suppressed the expression of LDHA in LN229 tumors transplanted in xenograft mice. Lower right inlet figure: M 4 N suppressed the O 2 consumption of LN229 cells. LN229 cells were treated with M 4 N (30 μM) for 24 h. O 2 consumption, which is an indicator of the activity of mitochondrial oxidative phosphorylation, was measured by an O 2 consumption rate assay kit (Cayman Chemicals, Ann Arbor, MI, USA). When the concentration of O 2 is lower, the intensity of the fluorescence becomes stronger. The bars in the figure indicate the standard deviations. There were statistically significant differences between the control and M 4 N-treated cells at all the time points later than 10 min by the Student’s t -test (p<0.05). (B) Effect of M 4 N (M) and/or T on the intracellular contents of NAD + , nicotinamide, and FAD. The data points are from the tumors of five mice. One asterisk (*) indicates that there was a significant difference between either control and T, or control and TM by the Student’s t -test (p<1%), whereas one sharp mark (#) indicates that there was a significant difference between T and TM by the Student’s t -test (p<5%). The upper edge of each box represents a limit of the upper quartile, whereas the lower edge represents a limit of the lower quartile. The line in the middle of each box represents a median value. (C) Effect of M and/or T on the expression of NAMPT. (D) Schematic showing the effect of the combination treatment of TM on the mechanisms of NAD + synthesis. See for metabolite abbreviations.

Article Snippet: Green fluorescent protein (GFP)-labeled LN229 cells were purchased from Bioresource Collection and Research Center (Hsinchu City, Taiwan).

Techniques: Expressing, Activity Assay, Concentration Assay, Fluorescence

Journal: PLOS ONE

Article Title: Tetra- O -methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets

doi: 10.1371/journal.pone.0285536

Figure Lengend Snippet: (A) Left panel: M 4 N+TMZ (TM) combination treatment synergistically reduced the viability of cultured LN229 cells. LN229 cells were treated with M 4 N (M) and/or TMZ (T) at the concentrations indicated in the figure. Cell viability was examined by the MTT assay at 72 h after treatment. The bars indicate standard deviations (N = 8). Right panel: A combination index (CI) plot obtained by the CompuSyn software for the experiment shown in the left panel. A CI less than 1.0 indicates that there is a synergy between two drugs. (B) M or TM combination treatment reduced HIF1A contents in cultured LN229 cells. LN229 cells were treated with M (40 μM) and/or T (30 μM) in the presence or absence of 50 or 150 μM CoCl 2 , which mimics hypoxic conditions. The cells were collected at 16 h after the treatment and the contents of HIF1A were examined by Western blotting. β-actin was used as a control. The arrows indicate the bands for HIF1A and β-actin. Control–vehicle only (C), M, T, and TM. (C) M 4 N treatment induces the rapid degradation of HIF1A in cultured HeLa cervical cancer cells during moderate and intermittent hypoxia. HeLa cells were exposed to either moderate hypoxia (4.0% O 2 ) for 10 h or intermittent hypoxia (see Materials and Methods) for 7 h in the presence or absence of 60 μM M 4 N, and HIF1A protein levels were determined by Western blot analysis ( Ca ). The extent of HIF1A protein loss due to PHD-dependent proteasome-mediated degradation was ascertained by co-treatment of the cells with DFO (150 μM) ( Ca ). β-actin was used as a control ( Ca ). Levels of HIF1A mRNA were assessed by Northern blot analysis ( Cb ). The blot was re-probed with a β-actin cDNA probe to control for gel loading and transfer ( Cb ).

Article Snippet: Green fluorescent protein (GFP)-labeled LN229 cells were purchased from Bioresource Collection and Research Center (Hsinchu City, Taiwan).

Techniques: Cell Culture, MTT Assay, Software, Western Blot, Northern Blot

Journal: PLOS ONE

Article Title: Tetra- O -methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets

doi: 10.1371/journal.pone.0285536

Figure Lengend Snippet: (A) Two stress-related proteins, ATF4 and CHAC1, were induced in LN229 tumors implanted in nu/nu mice treated orally with M 4 N (M) and TMZ (T) for 25 days. The proteins were detected by Western blotting. (B) TMZ+M 4 N (TM) combination treatment synergistically induced the production of superoxide in cultured LN229 cells. The superoxide assay using MitoROS 580 dyes was performed in LN229 cells treated with M (40 μM) and/or T (30 μM) for 2, 4, 24, or 48 h. Control—vehicle only (C), M, T, or TM. The bars indicate standard deviations (N = 8). Asterisks show that the difference between the control and the LN229 tumors treated with M, T, or TM were statistically significant by the Student’s t -test (*p<0.05, **p<0.01, and ***p<0.001).

Article Snippet: Green fluorescent protein (GFP)-labeled LN229 cells were purchased from Bioresource Collection and Research Center (Hsinchu City, Taiwan).

Techniques: Western Blot, Cell Culture

Journal: PLOS ONE

Article Title: Tetra- O -methyl-nordihydroguaiaretic acid inhibits energy metabolism and synergistically induces anticancer effects with temozolomide on LN229 glioblastoma tumors implanted in mice while preventing obesity in normal mice that consume high-fat diets

doi: 10.1371/journal.pone.0285536

Figure Lengend Snippet: The box figures showed the amounts of metabolites in the tumors (which included both LN229 cancer cells and their associated cells such as macrophages infiltrated in the tumors) treated with drug on an arbitrary scale. The difference in amount of 2-hydroxyglutarate (2-HE) between the tumors treated with TMZ (T) alone and those with TMZ+M 4 N (TM) was statistically significant by the Student’s t -test (**p<0.05). The difference in amount of itaconate between the control and the tumor treated with M 4 N (M) was statistically significant by the Student’s t -test (***p<0.01). The data points are from tumors of five mice. The upper edge of each box represents a limit of the upper quartile, whereas the lower edge represents a limit of the lower quartile. The line in the middle of each box represents a median value. The green downward arrows indicate that the contents in lactate, α-ketoglutarate, and LDHA were reduced by TM, compared with T alone. The red upward arrows indicate that the content of itaconate was increased by M, compared with the control or that the content of pyruvate was increased by T alone and TM than the control. Itaconate was produced from macrophage-related cells only (indicated by the designation ‘macrophage’), whereas 2-HE and lactate were produced by any cells including LN229 cells (indicated by the designation ‘LN229’). See for enzyme abbreviations.

Article Snippet: Green fluorescent protein (GFP)-labeled LN229 cells were purchased from Bioresource Collection and Research Center (Hsinchu City, Taiwan).

Techniques: Produced